I found that it was easiest to just bag the blossoms for saved seed. Then I can plant as close as I want and not worry so much when I see bee activity.
The bags are not all that expensive online or from WalMart if you are only bagging a few blossoms. You do need fine-mesh tulle bags because some of the smallest pollinating bees can fit through the mesh in cheesecloth or nylon netting. You can also use a piece of row cover secured with a twistie.
I have flowers planted in several places around the yard and still see bees working the tomato blossoms, so I don't think planting flowers in a separate area will help.
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