If it's for juice I think fridge is fine. There will be a lot of processes when boiling that will 'affect the flavour' in a similar way. Many of the volatiles expected from a fresh tomato will not be there after boiling. Better a fridged tomato than no tomato at all. Also, the tomatoes keep better on the vine (if there are no splitting conditions or things eating them of course) than even in a cool house (tested by me).
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